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Codon EvolutionMechanisms and Models$
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Gina M. Cannarozzi and Adrian Schneider

Print publication date: 2012

Print ISBN-13: 9780199601165

Published to Oxford Scholarship Online: May 2015

DOI: 10.1093/acprof:osobl/9780199601165.001.0001

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Codon models applied to the study of fungal genomes

Codon models applied to the study of fungal genomes

Chapter:
(p.164) Chapter 12 Codon models applied to the study of fungal genomes
Source:
Codon Evolution
Author(s):

Gabriela Aguileta

Tatiana Giraud

Publisher:
Oxford University Press
DOI:10.1093/acprof:osobl/9780199601165.003.0012

This chapter focuses on the application of codon models to study the evolution of fungi. The use of codon models to analyse fungal genomes has served many purposes: from establishing the selective forces behind the evolution of gene families, sexual chromosomes, regulatory networks, or host–pathogen interactions, to predicting ecologically relevant regions based on selective pressure profiles of expressed sequence tag or genomic data. Also, we have seen promising applications of codon models to track down functional shifts associated with changes in regulation, host, reproductive mode, or even environmental or lifestyle-associated changes. This chapter concludes by suggesting future applications of codon models in fungi-related studies.

Keywords:   codon models, fungi, fungal genome, evolution

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